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Key Message: A group of genes that were upregulated in a resistant cultivar while downregulated in a susceptible cultivar in a transcriptomics analysis of potato challenged by Spongospora subterranea infection, did not show the same expression pattern at the protein level.

Titel:	Transcriptomics is essential but not sufficient to unravel complex plant-pathogen interactions.
Autor/in / Beteiligte Person:	Balotf, S ; Wilson, R ; Wilson, C
Zeitschrift:	Plant cell reports, Jg. 43 (2024-06-17), Heft 7, S. 175
Veröffentlichung:	Berlin ; New York : Springer, 1981-, 2024
Medientyp:	academicJournal
ISSN:	1432-203X (electronic)
DOI:	10.1007/s00299-024-03248-1
Schlagwort:	Gene Expression Profiling Transcriptome Plant Pathology Genes, Plant Protozoan Infections Plasmodiophorida Disease Resistance genetics Plant Diseases parasitology Solanum tuberosum genetics Solanum tuberosum parasitology Gene Expression Regulation, Plant physiology
Sonstiges:	Nachgewiesen in: MEDLINE Sprachen: English Publication Type: Journal Article Language: English [Plant Cell Rep] 2024 Jun 17; Vol. 43 (7), pp. 175. <i>Date of Electronic Publication: </i>2024 Jun 17. MeSH Terms: Plant Diseases* / parasitology ; Solanum tuberosum* / genetics ; Solanum tuberosum* / parasitology ; Gene Expression Regulation, Plant* / physiology ; Gene Expression Profiling ; Transcriptome ; Plant Pathology ; Genes, Plant ; Protozoan Infections ; Plasmodiophorida ; Disease Resistance / genetics References: Balendres MA, Nichols DS, Tegg RS, Wilson CR (2016) Metabolomes of potato root exudates: compounds that stimulate resting spore germination of the soil-borne pathogen Spongospora subterranea. J Agric Food Chem 64:7466–7474. (PMID: 10.1021/acs.jafc.6b0390427640528) ; Balotf S, Wilson R, Nichols DS, Tegg RS, Wilson CR (2022) Multi-omics reveals mechanisms of resistance to potato root infection by Spongospora subterranea. Sci Rep 12:10804. (PMID: 10.1038/s41598-022-14606-y357526279233701) ; Birrell GW, Brown JA, Wu HI, Giaever G, Chu AM, Davis RW, Brown JM (2002) Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents. Proc Natl Acad Sci 99:8778–8783. (PMID: 10.1073/pnas.13227519912077312124375) ; Buccitelli C, Selbach M (2020) mRNAs, proteins and the emerging principles of gene expression control. Nat Rev Genet 21:630–644. (PMID: 10.1038/s41576-020-0258-432709985) ; Jones R, Harrison B (1969) The behaviour of potato mop-top virus in soil, and evidence for its transmission by Spongospora subterranea (Wallr.) Lagerh. Annals Appl Biol 63:1–17. (PMID: 10.1111/j.1744-7348.1969.tb05461.x) ; Lekota M, Muzhinji N, Van der Waals JE (2019) Identification of differentially expressed genes in tolerant and susceptible potato cultivars in response to Spongospora subterranea f. sp. subterranea tuber infection. Plant Pathol 68:1196–1206. (PMID: 10.1111/ppa.13029) ; Tai SL, Snoek I, Luttik MA, Almering MJ, Walsh MC, Pronk JT, Daran J-M (2007) Correlation between transcript profiles and fitness of deletion mutants in anaerobic chemostat cultures of Saccharomyces cerevisiae. Microbiology 153:877–886. (PMID: 10.1099/mic.0.2006/002873-0173222082895221) ; Urquhart AS, Idnurm A (2019) Limitations of transcriptome-based prediction of pathogenicity genes in the plant pathogen Leptosphaeria maculans. FEMS Microbiol Lett. https://doi.org/10.1093/femsle/fnz080. (PMID: 10.1093/femsle/fnz08030998236) ; Yadav R, Gupta P, Chhabra R, Thakur K, Dhar H (2024) Transcriptomics of host-pathogen interaction. In: Singh K, Kaur R, Deshmukh R (eds) Biotechnological advances for disease tolerance in plants. Springer, Singapore. ; Yu X, Wilson R, Balotf S, Tegg RS, Eyles A, Wilson CR (2022) Comparative proteomic analysis of potato roots from resistant and susceptible cultivars to Spongospora subterranea zoospore root attachment in vitro. Molecules 27:6024. (PMID: 10.3390/molecules27186024361447599504836) Grant Information: DP180103337 Australian Research Council Contributed Indexing: Keywords: Multi-omics; Plant-pathogen interactions; Proteomics; Transcriptomics Entry Date(s): Date Created: 20240617 Date Completed: 20240617 Latest Revision: 20240620 Update Code: 20240620

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Transcriptomics is essential but not sufficient to unravel complex plant-pathogen interactions.